PyBioPAX documentation
- PyBioPAX API
- BioPAX object model
BioPaxModel
PYBIOPAX_TQDM_CONFIG
- Base classes
- Interactions
- Physical entities
- Utility classes
BindingFeature
BioSource
BiochemicalPathwayStep
CellVocabulary
CellularLocationVocabulary
ChemicalConstant
ChemicalStructure
ControlledVocabulary
DeltaG
DnaReference
DnaRegionReference
EntityFeature
EntityReference
EntityReferenceTypeVocabulary
Evidence
EvidenceCodeVocabulary
ExperimentalForm
ExperimentalFormVocabulary
FragmentFeature
InteractionVocabulary
KPrime
ModificationFeature
NucleicAcidReference
NucleicAcidRegionReference
PathwayStep
PhenotypeVocabulary
ProteinReference
Provenance
PublicationXref
RelationshipTypeVocabulary
RelationshipXref
RnaReference
RnaRegionReference
Score
SequenceEntityReference
SequenceInterval
SequenceLocation
SequenceModificationVocabulary
SequenceRegionVocabulary
SequenceSite
SmallMoleculeReference
Stoichiometry
TissueVocabulary
UnificationXref
UtilityClass
Xref
- Pathway Commons client
- Path finding
- XML/OWL processing utilities